rs30208197 SNP Detail

Summary

• ID
  rs30208197
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18437398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATGAAGG CAAAGACTGA
  GAATCACTTC CTATGTCCCC CCAAACCTAT AATAAATAGG CTGGCACATG GTTGTGTTTA
  ATAAATGGTT GAATGGATAA ATGATATTAG CACTGCTGCT CTATAATAAC AAACTTTCTA
  AAACAAACAA TCCTTCTGGG TGCATGAGCA ACATGTATAA CTGCATTTTA ATTTATGGCT
  R
  TTAATTATAC AAAATAATGA GCTTCAGGGT ATGTTCATAT ATGCAGAGAT AATATTACAT
  TTAAATCAAA TTCAACTCCC ATTATCTACT TTTGTACCTC CCCTGACACT GGTCTCCTTC
  CTCCTCCTAA ATTGTTCTTG TCATGATTAA TCTTTGTTGT TGATTTGGCT ATTTAGAATC
  AGCTAGGCGA TGTACCACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45904598	mCV23958643	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss133034814	ENSMUSSNP4257669	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30208197					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18437398 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			within coordinates
Gm67618	predicted gene, 67618			1062 bp downstream
Rr626924	regulatory region 626924			686 bp distal