rs30207884 SNP Detail

Summary

• ID
  rs30207884
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101261235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCAGATGT GGAACTCTCA
  GCTCCTTCTC CAGTACCATG TCTGCCTGTA TGTTACCACA CTTCCCTGCC ACAATAATGG
  ATTAAAACTC TAAACCTGTA AGCTAGCGCC ACTTAAATGT TTTCCTTTGT AAGAAGAGTT
  CTCTCCGTGG TGTCTCTTCA CAGCAACAGA AACCCCAAGT GAAGGATGGA AAAAAGTGAC
  R
  CTCAGGAAGG GGAATACAGA GTATTTGCCC AGTCTCCGTG CTTTCTGAAG CTTTGAGCCT
  TTTCATTCAC AAGAAGTTGG GAGAGATTTA ACAGTGATTG AAAAATAGCT AAGCTTGCCA
  GCTGAGCCAC TGTTATAATC AGACACATTT TGCCCATTCT GACTCCCTTG ACCATCTGTG
  ACCAAACCAC GTTGAAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45405176	mCV23815909	ABI	CRAMUS_MOUSE	f	SNP		A	G			A	A
ss46813886	NES10711782	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A		A	A	A		G	A	A
ss135546721	ENSMUSSNP501380	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss320851918	CHEV_3_101157842	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30207884					SNP	A	A	G	G	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813886	NES10711782	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101261235 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	within coordinates
Rr582017	regulatory region 582017	299 bp proximal
Rr582018	regulatory region 582018	537 bp proximal
Rr582019	regulatory region 582019	1635 bp proximal