rs30203117 SNP Detail

Summary

• ID
  rs30203117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69034503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGAG TGCTTAGCCA ATCAAAAGGG
  R
  CGATGGAGAG CGGGGGACGG AAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45406088	mCV24615974	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss135265158	ENSMUSSNP6335956	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320791957	CHEV_3_68931092	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30203117					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69034503 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13258	CpG island 13258	within coordinates
Kpna4	karyopherin subunit alpha 4	78 bp upstream
Rr397714	regulatory region 397714	within coordinates
Rr578129	regulatory region 578129	1195 bp distal
Rr578130	regulatory region 578130	1114 bp distal
Rr578131	regulatory region 578131	966 bp distal
Rr578132	regulatory region 578132	within coordinates
Tssr902	transcription start site region 902	136 bp upstream
Tssr33536	transcription start site region 33536	1800 bp upstream
Tssr33537	transcription start site region 33537	285 bp upstream
Tssr33538	transcription start site region 33538	110 bp upstream
Tssr33539	transcription start site region 33539	85 bp upstream
Tssr33540	transcription start site region 33540	61 bp upstream