rs30201782 SNP Detail

Summary

• ID
  rs30201782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82051497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGTTATTT TGCTGTGGGG
  TTCTAAATGC CAGTACTGCA GCGGAGTTTT TTCCATCTCC CTAAAAGTGC AACAGCTCAA
  ATATTTGAGT ATAGTTTCTG AGACTACAAG ACTCCTCAAA TAAATACATG GACCAGACCA
  TTTAATAATC GGTAAAGGCC AAGTACTAGA GTTGCTTCAG AACTCCAGTT TCATGTCATC
  R
  TCCTTTGCCA CCCTTGATCA CTGCTACCTG ACATGATACT TCCTGAAGGG GGACAACAGT
  CTAGGAAAAA CAACAGATTG CTCTTTCTTT CATTATGAAC AAAAACTCAA AACTGCTCAT
  CTTGAAGTGT CTCCGAGAGC ATGCAATAGA AAAGGTGAGC AGGGCTCCGA CTAAGCCTGG
  CACTAGTCCG AATATAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45404417	mCV24169911	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		G
ss46713110	NES10751759	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G		G	G	G	G		A
ss135401153	ENSMUSSNP7102043	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss320817891	CHEV_3_81948112	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30201782					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46713110	NES10751759	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82051497 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13288	CpG island 13288			682 bp proximal
Gucy1a1	guanylate cyclase 1, soluble, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr578750	regulatory region 578750			444 bp proximal
Rr578751	regulatory region 578751			873 bp proximal
Rr578752	regulatory region 578752			1587 bp proximal
Tssr33784	transcription start site region 33784			1548 bp downstream
Tssr33785	transcription start site region 33785			1568 bp downstream
Tssr33786	transcription start site region 33786			1675 bp downstream