rs30199939 SNP Detail

Summary

• ID
  rs30199939
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105100331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATATATGAT AGATACCATA ATAAACAGAA AGTTAATGAC
  ATTCATTCAT CCTTCTGTTG CTTATAGCAC AGGCCACCTC TAATAATATT CCGTATCTCT
  W
  CTACTAGATT CTAACTGCTC CAAGGCTTGT TTCTGTCATC ATTGTACCCT TTGATTCTTC
  CCCATGCCCA TTCCTTGCTA AGATCCAAGC ACAAACAAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45405290	mCV23174111	ABI	CRAMUS_MOUSE	f	SNP		T	A				T		A
ss60430586	NES15931870	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	T	A		T		T	T		T	A	T	T		A
ss135573955	ENSMUSSNP1939924	ENSEMBL	ENSEMBL_Sanger	f	SNP			A						A
ss320861626	CHEV_3_104995933	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30199939					SNP	T	T	A	A	T	A	T	T	A	T	T	A	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60430586	NES15931870	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105100331 () rs orientation: forward

Symbol	Name	Function Class
Rr582682	regulatory region 582682	814 bp distal