rs30199911 SNP Detail

Summary

• ID
  rs30199911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:156269962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCT CATCCTTGTA TGACGAACCT
  Y
  GAGCTTTGTA GCATTTTAGA GAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45404393	mCV22727415	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss136128480	ENSMUSSNP3255909	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss321033470	CHEV_3_156227289	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30199911					SNP	T	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:156269962 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13974	CpG island 13974	1691 bp distal
Negr1	neuronal growth regulator 1	Intron
Rr587961	regulatory region 587961	617 bp distal
Tssr32480	transcription start site region 32480	1635 bp downstream
Tssr32481	transcription start site region 32481	1529 bp downstream