rs30199337 SNP Detail

Summary

• ID
  rs30199337
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:56044986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCTTTGG GGAATCACAC
  ATCAAATATC CTGCATATCA GATACTTAGA TTATTGATAA CAGTAGCAAA GTGAAAGAGC
  AATGACATCC TTTTATGTTT GGGGATCATC ACAGCATTAG GAAAGTTGAG AACCACAGTG
  TACTCCCAGT ACTCAGGGGA CTGAGGCCAA CCTGGGATAC ATAAAGCTAC TATAACTGAA
  M
  TACAAAGCTG TCACTTGTAG AGAAGGAACA GGCTCATGGA GAGTTAAACA CAAGTCAAAA
  CAAAGCATCA TTTTTACCCG AGGAAGTAAG AGTCCCTCAG CCAAAAGAAA GTGAATTTGC
  TGTTGCACTT TAGAGAACAG CTCAGGTTTC AACATGCAGA AAACAGAAGA CATTGCAAAG
  CTGTTGCTTT GCAGAAAAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47923122	NES11660781	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30199337					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47923122	NES11660781	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56044986 () rs orientation: forward

Symbol	Name	Function Class
Pde1c	phosphodiesterase 1C	1803 bp downstream
Rr379404	regulatory region 379404	1416 bp downstream
Rr631046	regulatory region 631046	806 bp distal
Rr631047	regulatory region 631047	1146 bp distal