rs30199335 SNP Detail

Summary

• ID
  rs30199335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:56044977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTCACCA CCCCTTTGGG
  GAATCACACA TCAAATATCC TGCATATCAG ATACTTAGAT TATTGATAAC AGTAGCAAAG
  TGAAAGAGCA ATGACATCCT TTTATGTTTG GGGATCATCA CAGCATTAGG AAAGTTGAGA
  ACCACAGTGT ACTCCCAGTA CTCAGGGGAC TGAGGCCAAC CTGGGATACA TAAAGCTACT
  R
  TAACTGAACT ACAAAGCTGT CACTTGTAGA GAAGGAACAG GCTCATGGAG AGTTAAACAC
  AAGTCAAAAC AAAGCATCAT TTTTACCCGA GGAAGTAAGA GTCCCTCAGC CAAAAGAAAG
  TGAATTTGCT GTTGCACTTT AGAGAACAGC TCAGGTTTCA ACATGCAGAA AACAGAAGAC
  ATTGCAAAGC TGTTGCTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45983780	mCV24073361	ABI	CRAMUS_MOUSE	f	SNP		G	A					A	A
ss47923120	NES11660778	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30199335					SNP	G	G	A	A	A	A	A	A	A	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47923120	NES11660778	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56044977 () rs orientation: forward

Symbol	Name	Function Class
Pde1c	phosphodiesterase 1C	1812 bp downstream
Rr379404	regulatory region 379404	1407 bp downstream
Rr631046	regulatory region 631046	797 bp distal
Rr631047	regulatory region 631047	1137 bp distal