rs30198742 SNP Detail

Summary

• ID
  rs30198742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143888427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCTTTG CTGGAGGTCA
  CCGGAGTTGG TCATTTTAGA GTTTGAGCTT CACCCTGTTT CCTGTTCTCT TGCTTTCTGT
  TACCCATGTG TGGGTGAAAA TATTATCAAG CTGGCTTCTG CGTTTGCCAC TGGGCTATGC
  CAGCCCTACT GTGATGGGCA GGAACAATAA ACTAAAATAA ACTCTTTCAT CTTTAAGTTG
  Y
  GCAACCATGA AGACCAGAGT TGGGATGCCA GCACTCAAGT AAACCGCCAA GGGTGGTGAT
  GCCTGCTTGC AATCTCTCAG CTCCAGGAGG CAAAGCAGAA AGACCTTGGG CTTGCTGTCC
  ATCTACTCTA GCCAAAGACT CATTGGAAGT GCTGTCTCAA AAATACACTG AAGGAGCCCA
  GGTGTGATGG CAGACACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45404113	mCV23165744	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss136029121	ENSMUSSNP6760825	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs30198742					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143888427 () rs orientation: forward

Symbol	Name	Function Class
Rr586593	regulatory region 586593	228 bp distal