rs30198581 SNP Detail

Summary

• ID
  rs30198581
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:56043602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACCAAGA GTTTGAGCAG
  CAACTTGGGC TACACAGTAA GAGCCTGTCT CAAGTCCACA GACAAAACAA AACAACTCCC
  ATCCCCAGAG AAATAGATGT TGAGTTGACA CGTCAGTGTA CTAGGGATAA TAAGAAGGAA
  TTAATGCCAG TGTGTCTGCC TGTTGCTATT TGTTTTCACA TTCAAATGTG TGACTAGTTT
  K
  TCTACTTAGA ACTTTATCTC TTCTATTTCC TTTAGTGTCT ATAGCTCATC TTCTAGTATT
  TCCTAAATTC AATTTTCTTT GTGAGTGTGG AGTTATTCAT ATATACACAC ACACATGCAC
  ATGTGTGCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCGATTGCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47923116	NES11660896	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	G	G	G	G	G	T	T	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30198581					SNP	T	G	G	G	G	G	G	G	G	T	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47923116	NES11660896	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56043602 () rs orientation: forward

Symbol	Name	Function Class
Rr379404	regulatory region 379404	32 bp downstream
Rr631046	regulatory region 631046	66 bp proximal
Rr631047	regulatory region 631047	217 bp proximal