rs30198386 SNP Detail

Summary

• ID
  rs30198386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:56019397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTGAGGA GTGAGCTTGA
  CTTGAATAAT TCAACTGAAT GGAGACTGGA GAAGAAATGA TTCTTTCAGA CTGAAGGACA
  GCTGGGTAGA AGCAAGAGGC TGAGGGATGC CTCTGCAGCC TTGGGTGACA CACCCTTCAA
  GGCTGTACCT TAAAGTTTGT AATTCGTGGT CTGTCCACAC TGATATAACT TCAGGCTTCT
  Y
  ACTGCTAAGA TTTAACCTTT GGCTTCTGGA CCTTTTTGGA GTCTTGCTTA ATTTCCAGAA
  AGAAAAAAAA TTTAAATGGT CCATATAAAC TTTGCTAGGC TACTACAAAG AATACCTGCA
  AAAGCACTGG TAAGCAGCAT CCAGGGGGGC CTGAAACATG GGATTGGAAC TTGTCGGTAA
  GGCCATGTTC TTTATCCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45907001	mCV24833516	ABI	CRAMUS_MOUSE	f	SNP		T	C					C
ss47922918	NES11661952	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	T	C	T	C
ss133220268	ENSMUSSNP5195248	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30198386					SNP	T	T	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922918	NES11661952	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56019397 () rs orientation: forward

Symbol	Name	Function Class
Rr631042	regulatory region 631042	1861 bp proximal