rs30192727 SNP Detail

Summary

• ID
  rs30192727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:56023014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACAAACA AACAAAAAAC
  AGAGACAAGT TTTCAGAAAA TTAGTCACAG AAATTATGCC AAAATGATCT TGAAGGTTAG
  TTTAAGGACA TCCCTCTTGA GTCGCAAAAG GGGCCCAGGA CCCTTCTGAG GTCAACCCAG
  CAGTTTAATG AGAGGCTCGT GGCTCCTGCT CAAAGCACAC TCCACTTGTC CCCATTGTTG
  Y
  CCTTTCAATG TAAGTCAATG TACAATGATG AAGCTGCTCC CAAACTGGCC GGCCGCTGTC
  ACCCACCAGC AGCAAGAGCT CAGCTCCACA GTGTCATCTA CACAGCTTGG GGATCCTCTC
  AGCGTCTCAG AGGCTTCTTC TCCTCAGTCA CAACAGAGAT TCAGGACCAG GCAGAGGGAA
  GCAAAGTTAG GGAATTTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47922950	NES11661836	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	T	T	C	C
ss133220335	ENSMUSSNP2921877	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30192727					SNP	T	T	C	C	C	C	C	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922950	NES11661836	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56023014 () rs orientation: forward

Symbol	Name	Function Class
Rr631042	regulatory region 631042	948 bp distal