rs30190899 SNP Detail

Summary

• ID
  rs30190899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:56020249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAATTCT TATGTAGGAG
  GACACTGGAA CAAAGAGGAA ATTAGTAATT TGCTACACAG TAGGAAGAGT TAGTGGTTGG
  TTTTTATAAG CCTGGATAGA GTGGGTGCTT AATAATGACC TGGGAAGAGG AAAAAAAAAC
  AATATTTTGT GTTTTTATCA TGCCAAACAC TGCATTTTAA CATTTTAAAT TCTACAATTG
  Y
  TTCAGAAACA CCCTTAGCCT TGCCCTACAA GTACCAAAAA GGAAAGAATG AAACCTGGGA
  GATTCCCATC TGGAATGGTG ACTGGAGACT TGTTCCACAT TGAAAGCTCA ATGTACTTAG
  GAAGACAGGA TACAGTCTGC AAAGGGTGCT TGTGATAAAG GGTCATAGGA GATCTTTCCC
  CTCTAATCTG AGGTCCAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47922930	NES11661958	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30190899					SNP	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922930	NES11661958	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56020249 () rs orientation: forward

Symbol	Name	Function Class
Rr631042	regulatory region 631042	1009 bp proximal