rs30183633 SNP Detail

Summary

• ID
  rs30183633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55782945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTTCAA GTAATGATGA
  TAAACTCACT CAACAAGTTC CAGAGGCTGT AAATAATGGA CCCAGTGGCC CTTCTTCAGA
  TGACAGTGAA CCGAAGCAGC ACTTTCGAGT CTCCTTTACA AGAAACAAGG GGTGTCACAG
  GATGACTGAT GAAGATAATT TGGACCAATG ACCAAAGGTC ACTATGCTAT TATCTAGCAG
  Y
  GCCAGCCTCA ATGTCTGTCT TAAAGCCATG CTAAACAGTA CATCAGACCA GACTTAGAAG
  GTTTTCTCAG CGTGGCTTGT CCATTCAAAG CTTCCCACAG AAAGAGCCTT AATGGACAGA
  TTCTTCTGGT ATCACAGGAG CCTGGAAGAG ACCATAGAAA CCAACCCTTC AATACCTGTT
  TCTCTAGCAA TCAAGGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45944246	mCV24070699	ABI	CRAMUS_MOUSE	f	SNP	C	T					T		T
ss47920868	NES11636444	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T		T	T	T	C	C		T	C	C	T
ss133216137	ENSMUSSNP442988	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T							T				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30183633					SNP	C	T	T	T	T	T	T	T	T	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920868	NES11636444	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55782945 () rs orientation: forward

Symbol	Name	Function Class
Gm38820	predicted gene, 38820	1240 bp upstream
Gm66822	predicted gene, 66822	within coordinates
Rr631022	regulatory region 631022	1292 bp distal
Rr631023	regulatory region 631023	1668 bp distal
Rr631024	regulatory region 631024	341 bp distal