rs30182821 SNP Detail

Summary

• ID
  rs30182821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55782131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCCATTT CATAGCTGAG
  AATACAGAGG AATTGAAATC AATCGTTTGC TTGTGCGGTA GCACAGGGAA TCAGGCTAGA
  GGTAAACCTT CTCATCTGTA GAACATGGGC AATGGTTCTG CTGCCCAGCT GGGTGGCTCT
  GTTCAGCTCT GTAGCCGTGC TGAACAGATA CGTATCACCA TTTTGCTGTT GTGGAGCCTG
  R
  AGATCGAATG GGGTGTACAA ATGTGTATAC ACGCCCCTCT GAAACTGTGA GAGGTACATT
  GAGCCCTCTA GTGCTTCCAG AGTTTCCAGA ATGCAAATGC CTACCCCACC ATAAGAAGCA
  GAGAGAAGCC AGGAAGAGTG TGACTGCAGG GAGCTGAACT CAAAGAAAGA TTCTCATCAT
  TACTGAAAGA AATGGCTTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47920852	NES11636435	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30182821					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920852	NES11636435	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55782131 () rs orientation: forward

Symbol	Name	Function Class
Gm38820	predicted gene, 38820	426 bp upstream
Gm66822	predicted gene, 66822	within coordinates
Rr631022	regulatory region 631022	478 bp distal
Rr631023	regulatory region 631023	854 bp distal
Rr631024	regulatory region 631024	within coordinates