rs30182817 SNP Detail

Summary

• ID
  rs30182817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55781709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCTGCA CACCAAGAGT
  TGTTAGGCAG CCAGCCCCCC CTCCTCCCTC CCTCTCACGT CTATGTAAGT CCTCCCACTG
  CCGGACTCAC CTTTTCCTTC TCTCTGGAGT AAGCAGTGGG GTCGGTGGGA ATATAGACAA
  GCTGCTGCCC ACCAACAACT TCTGAGTTCC TTTCTTCATT CATTCTCACT TTGAGACAGC
  R
  TGAGCAAATG ATTTAGCCAT CGGCACACCC CCTCAGGAAT TCATTTTTAG AGGGGACATG
  AGCAGGTGAA CACAAATGAT CATACAGTGG GAGGAAACCA CCATATGGGC TCGTGCCACT
  CCAGGAGAGC CTCAAGTACT GAGAAGCAAT AGGAAAGTCC TTGTGTCCAG AGCAGCAACT
  CAGAGAAAGG AAGCTTTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47920848	NES11636433	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30182817					SNP	A	G	G	G	G	G	G	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920848	NES11636433	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55781709 () rs orientation: forward

Symbol	Name	Function Class
Gm38820	predicted gene, 38820	4 bp upstream
Gm66822	predicted gene, 66822	within coordinates
Rr631022	regulatory region 631022	56 bp distal
Rr631023	regulatory region 631023	432 bp distal
Rr631024	regulatory region 631024	395 bp proximal