rs30181809 SNP Detail

Summary

• ID
  rs30181809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55780322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCCTTGA GGTTCCCACC
  AACCTCTCAT ATCGCCATGG AAGTAATTCC TAGGTAATGT CTGTATATTT CCAATCCTTT
  AAGGCAGAGG CAGAAAAAGC AAGCAGGCAG GATGCCCCTT TGAATAAAGC AGAATTGGGG
  CCCTTCTGGG AGGGTTTCTC ACAGCTATGA TTCTCTACTT TCTTTAGGGG ACAGGGATGG
  Y
  ATGCCTTTCT AGCATAGAAT TGTGCCCCAA GTAATAGCGT AGAAAATTCT CAGAGAGCTA
  CAGGGAATTC TTACAAGGAG GCCCCTCTGG TCTCTCCTAT TTCCTAGTGG TGCAGAGGGA
  GAACGGAGAA AGCAGCAAGC ATCCAAGGGC TTCAGTGCTT TGGATGACCT TCATCCACTT
  CTAGGAAGTT GTATTACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47920840	NES11636559	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30181809					SNP	C	C	C	C	C	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920840	NES11636559	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55780322 () rs orientation: forward

Symbol	Name	Function Class
Gm38820	predicted gene, 38820	within coordinates
Gm66822	predicted gene, 66822	991 bp upstream
Rr631022	regulatory region 631022	831 bp proximal
Rr631023	regulatory region 631023	934 bp proximal
Rr631024	regulatory region 631024	1782 bp proximal