rs30181804 SNP Detail

Summary

• ID
  rs30181804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55779980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTACCAAG GTTTCTGGCT
  CACTTTATTT TCTGTCTCTG GCTGGGTCAC CTTTATGGCA TTTTGGTCTT ATCTGGTGCC
  TTATAGTTCC TGCACCCTAA CCACACTGCC TTCCAGAACT TCAGCTTTGG TCAGGGTCAG
  CCTCTGTTCC TCTTTCTGGT GTTGGAATGG AGCAGATTTT AATTCCTTCA TATAGGCATT
  Y
  CTGGGAACCT CAGATATCAC ACTAAAAAGA ACACAAAGCC CCACCATCTC CCACTGCCCA
  GACCCTTGGG AACTGAGACT AGCAGGGGAA GGATAGTCAC CACCATTGTC CAAAATAAAG
  ACAACTGTAT TTACAGTAGC CACTGCCTTG AGGTTCCCAC CAACCTCTCA TATCGCCATG
  GAAGTAATTC CTAGGTAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45976178	mCV24070479	ABI	CRAMUS_MOUSE	f	SNP		C	T					T
ss47920834	NES11636555	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	C	C	T	C	C	T
ss133216113	ENSMUSSNP1896792	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30181804					SNP	C	C	T	T	T	T	T	T	C	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920834	NES11636555	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55779980 () rs orientation: forward

Symbol	Name	Function Class
Gm38820	predicted gene, 38820	within coordinates
Gm66822	predicted gene, 66822	1333 bp upstream
Rr631022	regulatory region 631022	1173 bp proximal
Rr631023	regulatory region 631023	1276 bp proximal