rs30181535 SNP Detail

Summary

• ID
  rs30181535
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:15259502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATTTAAAA AAAAAGCTTT CTGAGACTTT ATTGCTCAAA
  TTGTCTCTGA TTTGGATAGG TAGCCATCAG TTTTTACTCT AAAAAAAGGA AAGACAAAAC
  R
  AGCAAGGCCG TCTTCATCAG TGAGCAAGTG CCGTGACCGC TTTCAACTGA ATTGCAGTTC
  CCACTGCTGT CATTTCTTCT TGGACGCACT CATGAACAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45404060	mCV25444617	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G	A
ss60372999	NES15871316	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		A	G	G	G	G	G	G
ss134620110	ENSMUSSNP779893	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30181535					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60372999	NES15871316	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:15259502 () rs orientation: forward

Symbol	Name	Function Class
Rr573761	regulatory region 573761	165 bp distal
Rr573762	regulatory region 573762	within coordinates
Rr573763	regulatory region 573763	117 bp proximal
Rr573764	regulatory region 573764	1678 bp proximal