rs30180214 SNP Detail

Summary

• ID
  rs30180214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:47785358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACGGGAGG GAAATGATCC
  CCAGTGCAGG TGGTGCTGAT GTCCGCCCTA AGTCTACCTG CTGCTCTGAG GCCTCGCTGA
  GCCCCACCTC TCCCTTTCTT TCTGTTCTCT GGGTGCTGGC GGAAATCCTG AGCCTGCTTG
  CCCCTAACAC GCTGGGCTTT CTCATCTCAC ATCTAAATGT TTTCCTGTCC CTTTGCGGCT
  R
  CTGCTCTGTC CCCATTTTTG TGCACTCCTG CTTGCTCCAC CTCCTAATTC TGAAGGCATG
  GCTGCCAACC CTTCTGTAGC TCCCTCCTCC CTCCTCCTCC CGGTAGCTGG CGAATCTTAC
  ACCTTGCCTC CCTATCAGCT CTCCCTCAAA TGCTAACACA ATGGACCTCA AGCTTGCCCT
  TTAGTCTGTT TTAGAATTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	PWD/PhJ
ss46922134	NES10944142	PERLEGEN	MM_PANEL2	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	PWD/PhJ
rs30180214					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46922134	NES10944142	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47785358 () rs orientation: forward

Symbol	Name	Function Class
Rbmx2	RNA binding motif protein, X-linked 2	Intron
Rr691073	regulatory region 691073	1467 bp distal
Tssr160912	transcription start site region 160912	1452 bp downstream
Tssr160913	transcription start site region 160913	1386 bp downstream