rs30179567 SNP Detail

Summary

• ID
  rs30179567
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52894050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTGGCAT CAGGAGGTGG
  TCTGGGGCTG AGAGGTAGCG GTCAAACTGA GCCTGAGAGG AGAGCGGACA AGAGATGTAA
  GGAAGGCTAC GGAGCTACAA ACACCTGCTC CTGGGGAGCG TTAAAACCTC AGAAGGTCCC
  CAGCAAAGCT GTCTAAGGAT GTGTTCAAAA GAGCAGTTCT TAAAACATGT TAGTTAACAC
  Y
  CTAAAACGCC TATATTAAAC ACGCATGCAC CAGGGTTTGA AAAGGTTGGC AGAATAGAGT
  GAAGAGAGAG TGTAACATAC AACTTTCATT TTATGTGTGC ATGTTTCTGT GTGAACACGT
  TTGTGGAGGC CTGTGTATAT GTGTGTGTAT GTGTGTGTGT ATGTGTGTGT ATATGTGTGC
  GTGTGTGTGT ACAGAGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45404041	mCV22817335	ABI	CRAMUS_MOUSE	f	SNP		T	C						C
ss46935311	NES10819783	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T	C	C	C	T		C	T	T	C		C
ss320766359	CHEV_3_52790551	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30179567					SNP	T	T	C	T	T	T	T	C	C	C	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935311	NES10819783	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52894050 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	795 bp downstream
Rr576616	regulatory region 576616	700 bp distal