rs30178592 SNP Detail

Summary

• ID
  rs30178592
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86716834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGAAGTCCTG CGCAGCCTAC AGCCGCTTTT ACTCTACTGT GTACAACTAC TCCGCCGAAT
  GTATTTATCA AACTCTCTCT GTGTAGAGTG TGAGCAGCAT CTGAACCCAG CGGAAGTGAC
  TCCACCTTCC CGTGAAGAAA ACCTCCCTGC TCCATCAAGG CTGAGCTGGT TGACTCTCTC
  CTCGGCTGGC CGCCACCATC TGTTCTCTCA CACGTAGAAA AATCATAGCT CTCCTCCTAC
  TGTAGTCTGT TGGTGGGCTG CTCTGCCTCA CTTTCCAGCA AAGAGCAACA CACACACACA
  M
  ACACACACAC ACACACACAC ACCACACACA CACACACCAC ACACACACAC ACATGCATGC
  ATGCATGCAC ATGCACATTC ACGTGCACAC ACGAACATGC ACACACTCCC TACCAATGGC
  TTCCCTGCTG GTAGCTAGAC TGCTGAGGAT GAGACAGCAA GCAAGACAGT GTGTTCAAGT
  CACTTTGTGT GATTTCTGAC ATAGTTACCC AAACGCATCA GGTCCTGATC CCCAGACTTT
  GTAAATATTA CCTTATTAGG AAAAGGAGAT AGAGCAATAC AGGGACAGCC AGCCTTCTAT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J
ss45403771	mCV24907257	ABI	CRAMUS_MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J
rs30178592					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86716834 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579387	regulatory region 579387			1111 bp distal
Rr579388	regulatory region 579388			1258 bp distal
Rr579389	regulatory region 579389			within coordinates