rs30175238 SNP Detail

Summary

• ID
  rs30175238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:56045505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAGCTGG ACTCTCAACT
  GCTGGCACGA TCAGTGGGTG TGCACATACA TGACAGCTAT GGGAGGAAGC AGTAGAGTTT
  AATGCTCTCT TAGTGATGGT CAATGACTTG ACCTTGTGTA CATAAGTTTA GTAACTATAT
  GGAAAAGAAA GAACTAGAAC TCCTGAAGTT GATTATGGTC AGAGGCTGAG AATAAAAGAG
  R
  CTGGATAGTT ATTCTGATTT TTTCCTACCT AAGACTTGAC CCATAGTAAA AGAAAATTGC
  CATTGTGAAG ATTCTGTGAA TTCTTTGTTG TTTCAGAAAT GAGACATAAA ATGATGTCAA
  TTGTTTTCTA GAGTATGCTT TAAAAATACC CAGAATGTGT GTCATGTAAT GGATGAAAAA
  TGGGTTGCTC TACACATTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45902279	mCV24073368	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30175238					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56045505 () rs orientation: forward

Symbol	Name	Function Class
Pde1c	phosphodiesterase 1C	1284 bp downstream
Rr379404	regulatory region 379404	1935 bp downstream
Rr631046	regulatory region 631046	1325 bp distal
Rr631047	regulatory region 631047	1665 bp distal