rs30175089 SNP Detail

Summary

• ID
  rs30175089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113305471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGC CCACCCTAGA GGAGCTGGAA
  R
  CCCTACACAA GTACTTTCAG CTAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45901884	mCV24112060	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss133564346	ENSMUSSNP3369300	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs30175089					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113305471 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17839	CpG island 17839			1142 bp distal
Gm15492	predicted gene 15492			1690 bp upstream
Ogg1	8-oxoguanine DNA-glycosylase 1			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr399830	regulatory region 399830			1624 bp downstream
Rr636489	regulatory region 636489			1789 bp distal
Rr636490	regulatory region 636490			1528 bp distal
Tssr58194	transcription start site region 58194			1497 bp downstream
Tssr58195	transcription start site region 58195			1479 bp downstream
Tssr58196	transcription start site region 58196			1269 bp downstream
Tssr58197	transcription start site region 58197			1246 bp downstream
Tssr62435	transcription start site region 62435			1825 bp upstream
Tssr62436	transcription start site region 62436			1760 bp upstream