rs30174552 SNP Detail

Summary

• ID
  rs30174552
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55682033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTCTGT ACCAGTGGAT
  AGAAAAGTCA TGTCATCAGC CTTGGGGAGG CACTGAAGGG CTATTATGGA GGGAGGGCTC
  AGAGAGGTTG GAGGTGAGGA AGAGTTGTGG AAGCAGGAGA CAACTTCCAC AGTGGCTAGA
  AGTGACACAC CCACATGCTT ATTAATGTCA GGCATTTTGA TTGGAGGTTT ATTTGTGTTT
  M
  CAGCTCCTCT TGTGGGACAT AGACATACAA GAAATAATCA CTCCCACTAG ACTATGAGGC
  AAGAGTCTAT GTCTGATTTA TCTCTGTCTT TCACTTTCTC CCCCAAATGG ATAACCAGTA
  AGTGCTTGCT TGCTGAACAA ATGAATGAAT GAATTAGTGA ATAACTGGCA CGCATGTATT
  ACAATCCTAC CTTCACTATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47920122	NES11642621	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	C	C	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30174552					SNP	A	C	C	C	C	C	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920122	NES11642621	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55682033 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	251 bp distal
Rr631016	regulatory region 631016	654 bp distal