rs30174452 SNP Detail

Summary

• ID
  rs30174452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108425419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATTGCTTT GACTGTCTGC GACCCCCTTC CTCCCTCCCC
  CCCCCCCCCA TCACAGAAAG ATAGATGCAT GTAGAATAGT GTGATTTGAA TCTCTGGTAA
  Y
  GAACAGAAGG GCAGCTTGTA GGGAGATCCG CCTCAGTTTG ATAGGGCAGT CACCCTGAAG
  AGGAGGAAGA GTCTGCTGTG TGAGGGAGTT GCGTAAATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45902946	mCV23380680	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		C
ss51814082	NES14768936	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	T	T		C	T	C	C		C
ss321892720	CHEV_6_108398452	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30174452					SNP	T	T	C	C	C	T	C	T	C	C	T	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51814082	NES14768936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108425419 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636108	regulatory region 636108	1386 bp distal
Rr636109	regulatory region 636109	within coordinates