rs30173362 SNP Detail

Summary

• ID
  rs30173362
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89235889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAT AGGGGAAGCA GATAGTCTAC
  R
  GAAGGCCTGG TTTCTCCATT TGTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45903237	mCV23955153	ABI	CRAMUS_MOUSE	f	SNP	A	A					G	A
ss47999418	NES11912683	PERLEGEN	MM_PANEL2	f	SNP		A	G	G	A	A		A	A	A		G	A	A	G		A
ss133370829	ENSMUSSNP2482611	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A						A
ss321851705	CHEV_6_89208901	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30173362					SNP	A	A	G	G	A	A	G	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999418	NES11912683	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89235889 () rs orientation: forward

Symbol	Name	Function Class
Gm44204	predicted gene, 44204	within coordinates
Gm66553	predicted gene, 66553	1098 bp downstream
Rr634088	regulatory region 634088	503 bp distal
Tssr62001	transcription start site region 62001	630 bp upstream