rs30173166 SNP Detail

Summary

• ID
  rs30173166
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17750337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTGCTTTG GTGCAGAGCA GGCCCGGCAC AGTGGGCTGG
  GCTAGACAGC ACTTGTAGGC ACACGGAATA AGTAGGTATT TCAAGGATCA TGATAGCCAA
  M
  CTGTCTGAGA ACTGTTTGAA TGTTTGATAT AAAGTAACCT AACCTGTCGG TGAGTTTGCA
  TGGCCCCTGC ACAACATTCT GCTATCACTG GTGAGCGAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45901861	mCV22806966	ABI	CRAMUS_MOUSE	f	SNP	C	C	A					A
ss47815174	NES11712070	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	A	A		C	C	A	A		C	C	A	C		C
ss133021986	ENSMUSSNP3265889	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
ss321756215	CHEV_6_17700338	CHEVERUD	SCREENING_POP	f	SNP													A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30173166					SNP	C	C	A	A	A	A	A	A	C	C	A	A	A	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815174	NES11712070	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17750337 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42852	predicted gene 42852			1438 bp upstream
Rr626853	regulatory region 626853			1112 bp distal
Rr626854	regulatory region 626854			within coordinates
Rr626855	regulatory region 626855			635 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
Tssr1786	transcription start site region 1786			1235 bp downstream
Tssr55095	transcription start site region 55095			1316 bp downstream
Tssr55096	transcription start site region 55096			1187 bp downstream
Tssr55097	transcription start site region 55097			1073 bp downstream
Tssr55098	transcription start site region 55098			766 bp downstream