rs30172677 SNP Detail

Summary

• ID
  rs30172677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55680572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT CACTTGCAGA
  TTATCTATAG CATTGAGTCA CTATGATACA GCTCAAAAAT TTCCTTTTAT TATGTATAAA
  AGAAATGTGA CTATGAAGGA ATGCATATGT TTAATTTCAG TTTGGGAAAA AATGTAAAAC
  GAACACATGA AGTTATTATC AATACAAATT TAAATTTAAA CATGCCAATT ATTGACAAAA
  Y
  GGGAATTTGT AGAAGACTAA TCTCTCCTCT ACATAAATGC TCATTCTAAA TAGATTTTCC
  CATTGTTTTC CAGCCTCTCC GAACATTTTG GACCAATACA TTCTTTTTCT ATGGGTTTTT
  AATGGCTGTT TTTTGATGTC TATGCGTCTG GCTGTCAATG TGTTATATTT ATGGATTGTT
  CACCCTTTGT CATTCTCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47920096	NES11642606	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30172677					SNP	T	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920096	NES11642606	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55680572 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	112 bp proximal
Rr631016	regulatory region 631016	254 bp proximal