rs30172676 SNP Detail

Summary

• ID
  rs30172676
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55680558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCAGGGT TTTTTTTTTT
  TTTTCACTTG CAGATTATCT ATAGCATTGA GTCACTATGA TACAGCTCAA AAATTTCCTT
  TTATTATGTA TAAAAGAAAT GTGACTATGA AGGAATGCAT ATGTTTAATT TCAGTTTGGG
  AAAAAATGTA AAACGAACAC ATGAAGTTAT TATCAATACA AATTTAAATT TAAACATGCC
  M
  ATTATTGACA AAATGGGAAT TTGTAGAAGA CTAATCTCTC CTCTACATAA ATGCTCATTC
  TAAATAGATT TTCCCATTGT TTTCCAGCCT CTCCGAACAT TTTGGACCAA TACATTCTTT
  TTCTATGGGT TTTTAATGGC TGTTTTTTGA TGTCTATGCG TCTGGCTGTC AATGTGTTAT
  ATTTATGGAT TGTTCACCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss47920094	NES11642605	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs30172676					SNP	A	A	A	A	A	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920094	NES11642605	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55680558 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	126 bp proximal
Rr631016	regulatory region 631016	268 bp proximal