rs30172556 SNP Detail

Summary

• ID
  rs30172556
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:19801226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTT AGAAAACCTA ATGAGAACCA
  S
  ATGTAGTGGC CGCTGGCGAA CTTTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss39159232	mCV23607177	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		G
ss49161603	NES12476699	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	G	G	C		G		G	G		G	G
ss139192913	ENSMUSSNP4943144	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							G
ss324563995	CHEV_14_20570380	CHEVERUD	SCREENING_POP	f	SNP													C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30172556					SNP	G	C	C	C	G	G	C	C	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49161603	NES12476699	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19801226 () rs orientation: forward

Symbol	Name	Function Class
Gm62728	predicted gene, 62728	12 bp upstream
Nid2	nidogen 2	107 bp upstream
Rr389324	regulatory region 389324	within coordinates
Rr488149	regulatory region 488149	23 bp distal
Rr488150	regulatory region 488150	1023 bp distal
Rr488151	regulatory region 488151	within coordinates
Tssr124369	transcription start site region 124369	233 bp downstream
Tssr124370	transcription start site region 124370	204 bp downstream
Tssr124371	transcription start site region 124371	190 bp downstream
Tssr124372	transcription start site region 124372	118 bp upstream
Tssr127556	transcription start site region 127556	12 bp upstream