rs30171942 SNP Detail

Summary

• ID
  rs30171942
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55681059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGGAAG GTAGTCTACT
  CTCCAAGTCC CCTGAGGGTC CGCATCAACA CTGAGAACTG TTTTGACAGA ACTACTGAAT
  TGAGTGCAAA AGTCAAATTC CAGGGACATC AAAATTGGAC AGACTTTCTG TTCACTCACA
  AACAACAAGA GACCCATCCG CTTTGAGGGA CTAGGAAGAG CCATTCTCAG GGGTCCAGTG
  R
  CTTCCAGGGT TGGCAGGAAT AGCTTGCTGT AGGCAAAAGG GCAAGGAACA TTGAGTAGCA
  GAAATGGAAG CAAATAATTT ATTTATTTTT TTAAATTGCA AACTCTGATG TCTGGCCCCA
  GATATTTGAG CATATTCTCC ATTCTTCTAA CAAAAGAAAC ACACATGCTT ATTCCACCCT
  TTTCCGCCTC ATCTGGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45902425	mCV24548797	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss47920106	NES11642611	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30171942					SNP	A	A	G	G	G	G	G	G	G	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920106	NES11642611	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55681059 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	within coordinates
Rr631016	regulatory region 631016	within coordinates