rs30171647 SNP Detail

Summary

• ID
  rs30171647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72592558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG ACAGCAACAA GAACAGCAGC
  R
  GTCACTAGAT ATGCAAAGAA GTGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45903112	mCV24088310	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss133286278	ENSMUSSNP4676299	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss321822457	CHEV_6_72565569	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30171647					SNP	G	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72592558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	563 bp proximal
Gm20536	predicted gene 20536	within coordinates
Gm67593	predicted gene, 67593	1198 bp upstream
Rr399708	regulatory region 399708	1067 bp upstream
Rr632243	regulatory region 632243	79 bp distal
Rr632244	regulatory region 632244	708 bp proximal
Rr632245	regulatory region 632245	1161 bp proximal
Rr632246	regulatory region 632246	1253 bp proximal
Rr632247	regulatory region 632247	1415 bp proximal
Tgoln1	trans-golgi network protein	Coding-Synonymous
Tssr57152	transcription start site region 57152	1280 bp upstream
Tssr61478	transcription start site region 61478	1150 bp downstream