rs30171566 SNP Detail

Summary

• ID
  rs30171566
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55679900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGATAA AGTCACAGCC
  AGGTTTGAAG GACAGGTAGG CATGTGAATT GGACAGTTCT GCATTACTAA GTTGAAATAC
  ACGAGGCAGT CACTTTATAA AGGAAAGATA TTGACTTAGT CTAAACAGCA TGGTGTTGTG
  TCTAGGGAGA TTCCTCCCGC CCCTTGACTG CGAGCTTTCA AGGCAGATGA CACTGATGTG
  R
  TATTTGTGAG AAGCACAGTC ACTTCACAAA GCTGAGAGCC AGAGAGCAGT GCCGGCGTTG
  AGCTCACTCA TAAGAGCTGG CTTTTCCAAG TGCACAAGGG ACCCACAACA GCCACCCTTA
  TCCTTCCCAG GGCAGCTCCC TCCGTATCTT AAAGGGTGCC CATTGTGTTC GCTTAAGAGT
  CTGATCACCT CTCAGGCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47920082	NES11642597	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	A	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30171566					SNP	G	A	A	A	A	A	A	A	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920082	NES11642597	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55679900 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	784 bp proximal
Rr631015	regulatory region 631015	1611 bp distal
Rr631016	regulatory region 631016	926 bp proximal