rs30170757 SNP Detail

Summary

• ID
  rs30170757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55678845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAAACA GACAGACCAA
  CAGATATATA ATGCCTGAGT GACTACCTAT GCAAAAATTG TAGGATGAAA AAGAGGTTTA
  TTACATGGCA TTTTCTCTAA ATACCTTTTA GAAAAAAATG GAGACTATAT AGTATCTACA
  GCAGCTACTG ATGTTGGCTG TAATTATGGT TCTAGGTAGC CTTATCCAAC AAGGGCTCAC
  Y
  CTGACCAAGT GCCACCTGTA ATACAGGAAT GGCTAGTGTC AGTCTTCATC GCAGAAGAAT
  ATTTGGTCTA TGGGGGAGTT GTAAGAAACA TGTAAACAAC AACAACAACA AAGACCCTAC
  TATTTAATGC TCAATCAAGA GATACAGATA TTTCCTCTGA GGGGCTTCAA AGGCAGTGCT
  AAACTTTTAT GCTTGTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss47920072	NES11642589	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T	T	T	C
ss133214579	ENSMUSSNP41100	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs30170757					SNP	C	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920072	NES11642589	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55678845 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	1839 bp proximal
Rr631015	regulatory region 631015	556 bp distal
Rr631016	regulatory region 631016	1981 bp proximal