rs30169289 SNP Detail

Summary

• ID
  rs30169289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19402063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACAAATC CAATTTTATT
  GATGGCTCTC TTGAGCCTGG CATTAAAGCC CATGTGGCCT CTATGGTAGG TGGTTGTTGC
  TGGGGACAGA GTCTGCTTTT TTCTTTCTGA GCTGCTCAGC AAAGGTTCCT TCTGGGGACA
  CTATGGGTGA GTAGGCTTGG CAGGTTCTCT TGAACCCTCT CTTCTCAGAG CTTGAACTTA
  Y
  AAAAGGATTT CTGTTGTCAT TTCTCTATAG GAAACTTCTG AAATAAAGTC CAGATTAAGT
  TTTTCTGTTC TTTCAAGGGT GCAGTTTCTG TCTTATAGGC TTCCCCATGC CCATAGCTGG
  GGAAGGGCAC ATCTCCTATC AGAAAGTTAT ATGCCTTACT TCTCCTTTAA CCTAGGTACC
  CCCATGCACC CATTGTCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45403269	mCV25299772	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30169289					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19402063 () rs orientation: forward

Symbol	Name	Function Class
Gm52602	predicted gene, 52602	1041 bp downstream
Rr573976	regulatory region 573976	346 bp proximal
Rr573977	regulatory region 573977	1990 bp proximal