rs30168950 SNP Detail

Summary

• ID
  rs30168950
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:7846134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTATTTAT AAACGGTACA
  ATTTTCCAGT TCCTTATCAG ATAAATGTCA GACGAGCCTT GTGCACACGA TATTGTGTGC
  TCTAAGCATT GTATAGCATT TCTGCCAGCT GTAGTATATA TTTTTGTCCA GTTTAAATGA
  ATATAAGGTT TGAAGTTACC AAACAGTTAA CTCTTTTCAC CATATGTTCA GTAAAACTGA
  S
  TTAGGAAGGC AAGTATGACT CACTGAAAAG TCAGCATTAG TGGACAACTA ACTTTAGTGT
  TTCAGATTTT CTTGAAATTT ATGTTTTCCT CTATCTTTTT ACTCAGGACT CAGCAGTTTA
  CAAATGCTTT GTGGTCATTT CCCACTTAAA CTCCCTCTCC CTACATTGTG CTCTTAAAAA
  AAAAATCAGC CTACAGTTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45902491	mCV24778257	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss132955882	ENSMUSSNP320008	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs30168950					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7846134 () rs orientation: forward

Symbol	Name	Function Class
C1galt1	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	Intron
Cpgi17149	CpG island 17149	711 bp distal
Rr399558	regulatory region 399558	1409 bp downstream
Rr399559	regulatory region 399559	652 bp upstream
Rr626324	regulatory region 626324	1282 bp distal
Rr626325	regulatory region 626325	1557 bp distal
Rr626326	regulatory region 626326	within coordinates
Rr626327	regulatory region 626327	667 bp proximal
Rr626328	regulatory region 626328	1423 bp proximal
Tssr54889	transcription start site region 54889	1457 bp downstream
Tssr54890	transcription start site region 54890	1331 bp downstream
Tssr54891	transcription start site region 54891	1275 bp downstream
Tssr54892	transcription start site region 54892	835 bp downstream
Tssr54893	transcription start site region 54893	805 bp downstream
Tssr54894	transcription start site region 54894	843 bp upstream