rs30168577 SNP Detail

Summary

• ID
  rs30168577
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83726221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGGATTC CTGGCTGAAA
  GTCCATGGAT CTTACCCTGG GAGCTGAGTT CTCTTCTCAC TGTGGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTCTGT CTGTCTGTCT GTCCTGTATG TGTGTACTCT TCTTCCTGGT
  AACACCCTTC CCTCCCCCAC AGGATGCCCA GAGAGCTGGT GGGACATGGC CAGGGCTTGG
  B
  GGAGGAAACA GAGGGCTACA GCGCCCCTCA TCCCACAGAG CTCATCAGTG CAGGGTGAAG
  GGAGGGCAGC GGGGGCCTGG GGAAGGGTCC AGGAGGCCAC AGCTGTGGCC CAGAACCTTT
  TGGAACATTT GAGTGGAGTT GGGAAGAGGG AGTAGGGGAG GTGGGGGTTG AGGCCAGAGG
  GGAAGCACAT GGGGTAGGGA                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45900449	mCV22373503	ABI	CRAMUS_MOUSE	f	SNP	G	C						C
ss51352431	NES13741879	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	C	C	C	T	T	C	C	C
ss133349980	ENSMUSSNP5067144	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C						C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30168577					SNP	G	C	C	C	C	C	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51352431	NES13741879	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83726221 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp6v1b1	ATPase, H+ transporting, lysosomal V1 subunit B1			Intron
				Noncoding-Transcript-Variant
Gm66892	predicted gene, 66892			within coordinates
Rr632931	regulatory region 632931			827 bp proximal
Rr632932	regulatory region 632932			1242 bp proximal