rs30168525 SNP Detail

Summary

• ID
  rs30168525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55682700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCCACCT CCTCAAATCA
  AGGAAAAAAC TGTTGTGATT ACAGTTGAGT ACTTTGCTTT CAAGCCCTGG CTTGTCCACT
  TCCTGGTTCT ATTACACTGG GAGTTTCTTT GCCTGAAAAC CCAGGAACAA TGAGTATGCT
  GAGAGAGGGT GATCCTAGGA CAGGATGCTG ATGGTCTTTG CTTTTGTTTT TGTCTCATCT
  Y
  CCTTGTCAAT CAACTAGAAA AAGGTAACAC TAACAAGGGA GATTATTCCT CTGAAAATGG
  CCAAATGATT AATCCTATGA AATATCCTAG ACATAAGAAG AAAGGTATTT TGGTCATGAG
  CCTAGCCTTT AATGGCTGAG CCATCTCTCC AGCCCAAAAT ACCCATGGAA GGAGTTACAG
  AGACAAAGTT TGGAGCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss47920136	NES11642397	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	T	T	C
ss133214642	ENSMUSSNP6064645	ENSEMBL	ENSEMBL_Sanger	f	SNP	T				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30168525					SNP	T	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920136	NES11642397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55682700 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	918 bp distal
Rr631016	regulatory region 631016	1321 bp distal