rs30168524 SNP Detail

Summary

• ID
  rs30168524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55682547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTCTTT TCTAGTGTGC
  CTAAGAGTTG ACGTTTGAGG ATTAAAATAA AATAACTGGA TGGCTCATGC CTGCAACCCT
  AGTACTTGAA AGGCAGAAGG AGAAAAATTA TGAGTCTGAG GCCAGCCTGG GCTAACATAG
  CAATACCTTA CTTCTACCCA CCTCCTCAAA TCAAGGAAAA AACTGTTGTG ATTACAGTTG
  R
  GTACTTTGCT TTCAAGCCCT GGCTTGTCCA CTTCCTGGTT CTATTACACT GGGAGTTTCT
  TTGCCTGAAA ACCCAGGAAC AATGAGTATG CTGAGAGAGG GTGATCCTAG GACAGGATGC
  TGATGGTCTT TGCTTTTGTT TTTGTCTCAT CTCCCTTGTC AATCAACTAG AAAAAGGTAA
  CACTAACAAG GGAGATTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47920134	NES11642396	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	G	A	A	G	G	A	G	G	A
ss133214624	ENSMUSSNP3099925	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30168524					SNP	G	G	A	A	A	A	A	G	A	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920134	NES11642396	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55682547 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	765 bp distal
Rr631016	regulatory region 631016	1168 bp distal