rs30168438 SNP Detail

Summary

• ID
  rs30168438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86849122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGT CTAAGGGTGT TTACTATAGA
  Y
  CCTGTGAGCT GGTGCATGGG CAGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45901511	mCV24610019	ABI	CRAMUS_MOUSE	f	SNP							T		C
ss51748753	NES14798548	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T	C	C	C		C	C	T	C		T
ss133360202	ENSMUSSNP6300017	ENSEMBL	ENSEMBL_Sanger	f	SNP									C
ss321847607	CHEV_6_86822134	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30168438					SNP	C	C	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51748753	NES14798548	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86849122 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aak1	AP2 associated kinase 1			Intron
				Noncoding-Transcript-Variant
Gm44152	predicted gene, 44152			1646 bp upstream
Rr633547	regulatory region 633547			1372 bp distal
Rr633548	regulatory region 633548			9 bp distal
Tssr57515	transcription start site region 57515			1327 bp downstream