rs30168381 SNP Detail

Summary

• ID
  rs30168381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27243291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTGCTTG GTAGGGGACA
  GTTTTGTATG CAACCTCCAG ACTTGGAATG AAGACCACTA TGTCACAGAA GTTTGAGGGG
  TCAGTAACCA TAGTGATATG ATTAGCTAAT TCAGTTGGAT TTCCTACAAA GACAAGGCAG
  CAGAAAGGCT TCACCTTCAG GGAGGTATTT ACTCTGTATT TATTCTAATA GGTGAGCAGG
  Y
  TGACTTGTGT TCAGCAGACA GCACTTGGGA AATGGTAAGG TCAAGTTGAC TCAGTTACCA
  GATGTGTAAG GGAATAAAAT ATTAAATAGA CCCAGCTTAA TTTTTTCTAG CACTTCGGCA
  AATCCAGCCC TGAGCACAGA GAGGGTGTCC CTCTTATGTG ATCTTTTGTG AGAAAACCTA
  TCCTGTTTCC AAACTTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45402969	mCV27552862	ABI	CRAMUS_MOUSE	f	SNP		T	C					T
ss60380392	NES15883739	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C		C	T	T	T	T	T	T
ss134702611	ENSMUSSNP5961410	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30168381					SNP	T	T	C	C	T	T	C	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380392	NES15883739	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27243291 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			70 bp upstream
Rr574359	regulatory region 574359			366 bp distal
Rr574360	regulatory region 574360			492 bp proximal
Rr574361	regulatory region 574361			1641 bp proximal
Tssr28607	transcription start site region 28607			733 bp downstream
Tssr28608	transcription start site region 28608			701 bp downstream
Tssr28609	transcription start site region 28609			684 bp downstream