rs30167672 SNP Detail

Summary

• ID
  rs30167672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55682378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAATGAAT TAGTGAATAA
  CTGGCACGCA TGTATTACAA TCCTACCTTC ACTATGGAAT AGGTGCCAGG ATTAGTGCAG
  AGAGAATAGT GACCCATACT TAAATCTTCG TGTGTTTCTC CTTCCCTCCT TTTCCTTCTC
  AACAAAAAAT TCCATTTTAA TTCCCCGTGC TTCTTCTTTT CTAGTGTGCC TAAGAGTTGA
  Y
  GTTTGAGGAT TAAAATAAAA TAACTGGATG GCTCATGCCT GCAACCCTAG TACTTGAAAG
  GCAGAAGGAG AAAAATTATG AGTCTGAGGC CAGCCTGGGC TAACATAGCA ATACCTTACT
  TCTACCCACC TCCTCAAATC AAGGAAAAAA CTGTTGTGAT TACAGTTGAG TACTTTGCTT
  TCAAGCCCTG GCTTGTCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47920132	NES11642629	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	T	T	C	T	T	C
ss133214612	ENSMUSSNP7199325	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30167672					SNP	T	T	C	C	C	C	C	C	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920132	NES11642629	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55682378 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	596 bp distal
Rr631016	regulatory region 631016	999 bp distal