rs30167666 SNP Detail

Summary

• ID
  rs30167666
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55682251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGACATA CAAGAAATAA
  TCACTCCCAC TAGACTATGA GGCAAGAGTC TATGTCTGAT TTATCTCTGT CTTTCACTTT
  CTCCCCCAAA TGGATAACCA GTAAGTGCTT GCTTGCTGAA CAAATGAATG AATGAATTAG
  TGAATAACTG GCACGCATGT ATTACAATCC TACCTTCACT ATGGAATAGG TGCCAGGATT
  W
  GTGCAGAGAG AATAGTGACC CATACTTAAA TCTTCGTGTG TTTCTCCTTC CCTCCTTTTC
  CTTCTCAACA AAAAATTCCA TTTTAATTCC CCGTGCTTCT TCTTTTCTAG TGTGCCTAAG
  AGTTGACGTT TGAGGATTAA AATAAAATAA CTGGATGGCT CATGCCTGCA ACCCTAGTAC
  TTGAAAGGCA GAAGGAGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47920126	NES11642623	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	A	A	A	T	A	T	A
ss133214606	ENSMUSSNP581802	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30167666					SNP	T	A	A	A	A	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920126	NES11642623	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55682251 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	469 bp distal
Rr631016	regulatory region 631016	872 bp distal