rs30167593 SNP Detail

Summary

• ID
  rs30167593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118455200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT AGCCCCAGCA CTGTAAAGGC
  Y
  GAGGCAGGCA GATAGCAAGA TTAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45901906	mCV24802909	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss133583019	ENSMUSSNP1686141	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
ss321924610	CHEV_6_118428257	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30167593					SNP	T	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118455200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17903	CpG island 17903	725 bp proximal
Rr637483	regulatory region 637483	within coordinates
Rr637484	regulatory region 637484	201 bp proximal
Rr637485	regulatory region 637485	1071 bp proximal
Tssr62662	transcription start site region 62662	998 bp downstream
Zfp9	zinc finger protein 9	Intron