rs30167249 SNP Detail

Summary

• ID
  rs30167249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83575754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATGTGC ATAGAATATT
  TATTTGTATA ATAGTTATGT ATATATGCAT GCATTTGAGG GAAATGGAAA TGTTTTATAT
  AAAACGACTA TATACATGTG TAAAAGTAAA TATTATGAAC AATGTACAAA ATGTCTACAT
  CTGACTACAT TGTAAAGAAC ACGCAGGCAT CTGTGGCGGG GTGGGAGGAG GTCTGAACTT
  Y
  TGTTTCTATT CTGAGGTTTT GGAGTGAAGC AGGAGGGAGC ATTATCAAGC ACACAGGCAC
  TATTCGCCTT GAGCTATAGA GGGCGCAGTG GGGCCAAAGT CCGGCTGACA AATGGAGTTC
  TTCGGCAGCC TTCATTCAAT GTCAACACAG TGAATTTGTA TAATAGTTAT GTATATATGC
  ATGCATTTGA GGGAAATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45900534	mCV22812581	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss133348841	ENSMUSSNP3948831	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss321844684	CHEV_6_83548766	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30167249					SNP	T	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83575754 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17607	CpG island 17607	257 bp proximal
Rr632898	regulatory region 632898	369 bp distal
Rr632899	regulatory region 632899	within coordinates
Rr632900	regulatory region 632900	69 bp proximal
Rr632901	regulatory region 632901	968 bp proximal