rs30163139 SNP Detail

Summary

• ID
  rs30163139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152057567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGCTGCAGTG GCTGTCCTTG TCCTTGGTCT TGTTTGATGT AAGACTTAAG GCTCAGATTA
  CTTGAGGATT TTATTAGACC TCTGGCAAAT TTGTTAACCC TTTCATGTTT TCTCTCCCAT
  AGTTGTTATG ATTAGTTCAA CTAGATAAAC TAAAACTGAC CATGACGTTC CACTTACTGG
  GCAGATTTTT AAGAAATTTC TTTTTAAGAT TATCATAAAT TATATCATTT TCCCTTTCCC
  TTTCCTCCCA CCAAACCTTC CTATATAGCC TTCCTTGATC TCTTAAATTT CCTGCCTCCC
  Y
  CCCCCCCCCT CTCTCTCAAG TCAGGGTTTC TCTGTGTAGC CCTGGCTGTC CTGGAACTCG
  CTCTGTAGAC CAGGCTGGCC TCGAACTCAC AGATTCACCA GCTTCTGCCT CTGCAGAGAT
  TGAAGGCGAG CACTACCATA CCTGGCTTCA TGAGCAGGTT TTTCATTAAT TGTTTTTACA
  TGCATGCATG CATACATACA TATTCCTAAA TAGAACCTGC CGAATGGGAA TGGATATAGT
  GTTACCCCTA CGTATGTTTC CAGAGCTCAC CATCTGGTAT TGAACAGCCA GTTGACCAGC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45402614	mCV25024462	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30163139					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152057567 () rs orientation: forward

Symbol	Name	Function Class
Rr587536	regulatory region 587536	616 bp distal
Rr587537	regulatory region 587537	within coordinates
Tssr32408	transcription start site region 32408	1918 bp downstream
Usp33	ubiquitin specific peptidase 33	within coordinates