rs30162775 SNP Detail

Summary

• ID
  rs30162775
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126433677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGTATG ACCGTCTCAC
  TTGCTTTGCT CTAAGGTGAT TCTCTTCTCA GTTCTGTTCA GTGACACCCA ATGCCTCTTG
  GTGCATTTTA ATGCTCATCT TGATTAAAAA AAACAGAGAG AGATATTAGA ATTTAAGAGG
  ACCCTGTGAT TGTCATTGCC ACTTTTATAC CTTAACCAAT ATAGGTGCAT TAAATGTCTC
  Y
  CCAAATTTAA GTAACTTTTG AAAAGATTCT CCCAGTTTCC CTTAACACCT AAATTTGACA
  TTACTTTGGT TGAAGCCATT ACTTTCTGGT TTGTCCTCAG TAGACATGAG GGTAGCCGTT
  AGCATTCCCA GAACAATAAG TAGTACAAAA TTCTGGAACA TGAAAAGACC CCCTCTCAGC
  TCTCCCCTCA CATCCCGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45402439	mCV23465817	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	T
ss135837673	ENSMUSSNP5176424	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		T
ss320946894	CHEV_3_126342946	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30162775					SNP	C	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126433677 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584663	regulatory region 584663			1171 bp distal
Rr584664	regulatory region 584664			177 bp distal
Rr584665	regulatory region 584665			583 bp proximal
Rr584666	regulatory region 584666			1216 bp proximal