rs30162450 SNP Detail

Summary

• ID
  rs30162450
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133455934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGTTGAG GAAATGGATA
  GATCAGAAGG TAGGTGCCAG AGTGCATAGC ATAGAGTAGT GGCTTAAAGA TATCCAAGTC
  TGAGGGGGAA GTGATTGTGT TAGGAGATCT TAGAAGAGAC CCGGGGAGAT GGTGGCTGAT
  GCTCTAGAGA AGTTGTAACG TTGGGCACTG GAAGAGGTAA AGCTTCCCTG CTTAGGAAAC
  R
  GGGATGGAGA ACCAGGTACC TGCAGGCAGC AGCTCACCGC TGAAGAGGAA CTGCTTTGTC
  TGTGATGTGT GAGCAAGGTC ATAGTTCAGA TGAGGTGATT GTACTGCATG TCAATAGCAC
  GAAGTGGCTA CAGAGTGACA GTGAAATGGA GCTCACTGAG AGAAAAACAT AGGACTTCCC
  ATAGGACAGG GGCTAAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45403093	mCV23615502	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G	G
ss135918901	ENSMUSSNP4995812	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30162450					SNP	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133455934 () rs orientation: forward

Symbol	Name	Function Class
Gm64379	predicted gene, 64379	619 bp upstream
Rr398038	regulatory region 398038	716 bp downstream
Rr585594	regulatory region 585594	646 bp distal
Rr585595	regulatory region 585595	545 bp distal
Rr585596	regulatory region 585596	924 bp proximal
Tssr35771	transcription start site region 35771	632 bp upstream