rs30161534 SNP Detail

Summary

• ID
  rs30161534
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152061108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCCTTC CCCTTCTTCC
  CCTTCTTCCC CTTCTTTCCC TTCTTCCCCT TCCCCTTCTT CTCTCCCCTT CCCCTTCCCC
  TTCCCCTTCC CCTTCTTCCC TCCCCTTCCC CTTCCCCTCC CTTTTTTGAA GACTTCCCTT
  TGAGATCTCA GAGGCAATAC CAAATACCTT CGTATTTACT TAGTATGGGG AAGATTGTTA
  W
  GCCTCATTGC TGAGGCGCTG CCAGCTGAGT GCTTTGTCAT CTCTGTTTAT CAGTCTTTGA
  GCTGTGGTTG GTGGCAGCAC ACAGCCATGA CAGGCTTTGA GGATGAGTGA TGTTTCCTTC
  CTCCAGCCTC TGGGTCTTGC TTGTTCTTGT CATGTCCCAG CTGTGCACTC ATTGGAGCTG
  GGAGTGAGTA TGTAGTTACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45402785	mCV25311380	ABI	CRAMUS_MOUSE	f	SNP	A	A					T		T
ss51676310	NES14645074	PERLEGEN	MM_PANEL2	f	SNP		A	T	A	A	A		T	T	T	T		T	T		T
ss321028744	CHEV_3_152018435	CHEVERUD	SCREENING_POP	f	SNP												T			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30161534					SNP	A	A	T	A	A	A	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676310	NES14645074	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152061108 () rs orientation: forward

Symbol	Name	Function Class
Rr587538	regulatory region 587538	within coordinates
Rr587539	regulatory region 587539	1362 bp proximal
Usp33	ubiquitin specific peptidase 33	Intron